496 lines
21 KiB
Plaintext
496 lines
21 KiB
Plaintext
Metadata-Version: 2.3
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Name: mne
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Version: 1.8.0
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Summary: MNE-Python project for MEG and EEG data analysis.
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Project-URL: Homepage, https://mne.tools/
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Project-URL: Download, https://pypi.org/project/mne/#files
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Project-URL: Bug Tracker, https://github.com/mne-tools/mne-python/issues/
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Project-URL: Documentation, https://mne.tools/
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Project-URL: Forum, https://mne.discourse.group/
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Project-URL: Source Code, https://github.com/mne-tools/mne-python/
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Author-email: Alexandre Gramfort <alexandre.gramfort@inria.fr>
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Maintainer-email: Dan McCloy <dan@mccloy.info>
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License: BSD-3-Clause
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License-File: LICENSE.txt
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Keywords: ECoG,EEG,MEG,brain,fNIRS,neuroimaging,neuroscience
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Classifier: Intended Audience :: Developers
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Classifier: Intended Audience :: Science/Research
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Classifier: License :: OSI Approved
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Classifier: Operating System :: MacOS
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Classifier: Operating System :: Microsoft :: Windows
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Classifier: Operating System :: POSIX
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Classifier: Operating System :: Unix
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Classifier: Programming Language :: Python
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Classifier: Programming Language :: Python :: 3
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Classifier: Topic :: Scientific/Engineering
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Classifier: Topic :: Software Development
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Description-Content-Type: text/x-rst
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.. -*- mode: rst -*-
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|MNE|
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MNE-Python
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==========
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MNE-Python is an open-source Python package for exploring,
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visualizing, and analyzing human neurophysiological data such as MEG, EEG, sEEG,
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ECoG, and more. It includes modules for data input/output, preprocessing,
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visualization, source estimation, time-frequency analysis, connectivity analysis,
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machine learning, statistics, and more.
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Documentation
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^^^^^^^^^^^^^
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`Documentation`_ for MNE-Python encompasses installation instructions, tutorials,
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and examples for a wide variety of topics, contributing guidelines, and an API
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reference.
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Forum
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^^^^^^
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The `user forum`_ is the best place to ask questions about MNE-Python usage or
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the contribution process. The forum also features job opportunities and other
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announcements.
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If you find a bug or have an idea for a new feature that should be added to
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MNE-Python, please use the
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`issue tracker <https://github.com/mne-tools/mne-python/issues/new/choose>`__ of
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our GitHub repository.
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Installation
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^^^^^^^^^^^^
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To install the latest stable version of MNE-Python with minimal dependencies
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only, use pip_ in a terminal:
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.. code-block:: console
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$ pip install --upgrade mne
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The current MNE-Python release requires Python 3.9 or higher. MNE-Python 0.17
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was the last release to support Python 2.7.
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For more complete instructions, including our standalone installers and more
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advanced installation methods, please refer to the `installation guide`_.
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Get the development version
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^^^^^^^^^^^^^^^^^^^^^^^^^^^
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To install the latest development version of MNE-Python using pip_, open a
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terminal and type:
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.. code-block:: console
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$ pip install --upgrade https://github.com/mne-tools/mne-python/archive/refs/heads/main.zip
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To clone the repository with `git <https://git-scm.com/>`__, open a terminal
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and type:
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.. code-block:: console
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$ git clone https://github.com/mne-tools/mne-python.git
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Dependencies
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^^^^^^^^^^^^
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The minimum required dependencies to run MNE-Python are:
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- `Python <https://www.python.org>`__ ≥ 3.9
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- `NumPy <https://numpy.org>`__ ≥ 1.23
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- `SciPy <https://scipy.org>`__ ≥ 1.9
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- `Matplotlib <https://matplotlib.org>`__ ≥ 3.6
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- `Pooch <https://www.fatiando.org/pooch/latest/>`__ ≥ 1.5
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- `tqdm <https://tqdm.github.io>`__
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- `Jinja2 <https://palletsprojects.com/p/jinja/>`__
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- `decorator <https://github.com/micheles/decorator>`__
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- `lazy_loader <https://pypi.org/project/lazy_loader/>`__
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For full functionality, some functions require:
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- `scikit-learn <https://scikit-learn.org/stable/>`__ ≥ 1.1
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- `Joblib <https://joblib.readthedocs.io/en/latest/index.html>`__ ≥ 0.15 (for parallelization)
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- `mne-qt-browser <https://github.com/mne-tools/mne-qt-browser>`__ ≥ 0.5 (for fast raw data visualization)
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- `Qt <https://www.qt.io>`__ ≥ 5.15 via one of the following bindings (for fast raw data visualization and interactive 3D visualization):
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- `PySide6 <https://doc.qt.io/qtforpython-6/>`__ ≥ 6.0
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- `PyQt6 <https://www.riverbankcomputing.com/software/pyqt/>`__ ≥ 6.0
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- `PyQt5 <https://www.riverbankcomputing.com/software/pyqt/>`__ ≥ 5.15
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- `Numba <https://numba.pydata.org>`__ ≥ 0.54.0
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- `NiBabel <https://nipy.org/nibabel/>`__ ≥ 3.2.1
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- `OpenMEEG <https://openmeeg.github.io>`__ ≥ 2.5.6
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- `pandas <https://pandas.pydata.org>`__ ≥ 1.3.2
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- `Picard <https://pierreablin.github.io/picard/>`__ ≥ 0.3
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- `CuPy <https://cupy.dev>`__ ≥ 9.0.0 (for NVIDIA CUDA acceleration)
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- `DIPY <https://dipy.org>`__ ≥ 1.4.0
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- `imageio <https://imageio.readthedocs.io/en/stable/>`__ ≥ 2.8.0
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- `PyVista <https://pyvista.org>`__ ≥ 0.32 (for 3D visualization)
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- `PyVistaQt <https://qtdocs.pyvista.org>`__ ≥ 0.4 (for 3D visualization)
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- `mffpy <https://github.com/BEL-Public/mffpy>`__ ≥ 0.5.7
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- `h5py <https://www.h5py.org>`__
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- `h5io <https://github.com/h5io/h5io>`__
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- `pymatreader <https://pymatreader.readthedocs.io/en/latest/>`__
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Contributing
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^^^^^^^^^^^^
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Please see the `contributing guidelines <https://mne.tools/dev/development/contributing.html>`__ on our documentation website.
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About
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^^^^^
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+---------+------------+----------------+
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| CI | |Codecov| | |Bandit| |
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+---------+------------+----------------+
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| Package | |PyPI| | |conda-forge| |
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+---------+------------+----------------+
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| Docs | |Docs| | |Discourse| |
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+---------+------------+----------------+
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| Meta | |Zenodo| | |OpenSSF| |
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+---------+------------+----------------+
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License
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^^^^^^^
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MNE-Python is licensed under the BSD-3-Clause license.
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.. _Documentation: https://mne.tools/dev/
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.. _user forum: https://mne.discourse.group
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.. _installation guide: https://mne.tools/dev/install/index.html
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.. _pip: https://pip.pypa.io/en/stable/
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.. |PyPI| image:: https://img.shields.io/pypi/dm/mne.svg?label=PyPI
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:target: https://pypi.org/project/mne/
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.. |conda-forge| image:: https://img.shields.io/conda/dn/conda-forge/mne.svg?label=Conda
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:target: https://anaconda.org/conda-forge/mne
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.. |Docs| image:: https://img.shields.io/badge/Docs-online-green?label=Documentation
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:target: https://mne.tools/dev/
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.. |Zenodo| image:: https://zenodo.org/badge/DOI/10.5281/zenodo.592483.svg
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:target: https://doi.org/10.5281/zenodo.592483
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.. |Discourse| image:: https://img.shields.io/discourse/status?label=Forum&server=https%3A%2F%2Fmne.discourse.group%2F
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:target: https://mne.discourse.group/
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.. |Codecov| image:: https://img.shields.io/codecov/c/github/mne-tools/mne-python?label=Coverage
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:target: https://codecov.io/gh/mne-tools/mne-python
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.. |Bandit| image:: https://img.shields.io/badge/Security-Bandit-yellow.svg
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:target: https://github.com/PyCQA/bandit
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.. |OpenSSF| image:: https://www.bestpractices.dev/projects/7783/badge
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:target: https://www.bestpractices.dev/projects/7783
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.. |MNE| image:: https://mne.tools/dev/_static/mne_logo_gray.svg
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:target: https://mne.tools/dev/
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