"""Some utility functions.""" # Authors: The MNE-Python contributors. # License: BSD-3-Clause # Copyright the MNE-Python contributors. import contextlib import importlib import inspect import logging import os.path as op import re import sys import warnings from io import StringIO from typing import Any, Callable, TypeVar from decorator import FunctionMaker from .docs import fill_doc logger = logging.getLogger("mne") # one selection here used across mne-python logger.propagate = False # don't propagate (in case of multiple imports) # class to provide frame information (should be low overhead, just on logger # calls) class _FrameFilter(logging.Filter): def __init__(self): self.add_frames = 0 def filter(self, record): record.frame_info = "Unknown" if self.add_frames: # 5 is the offset necessary to get out of here and the logging # module, reversal is to put the oldest at the top frame_info = _frame_info(5 + self.add_frames)[5:][::-1] if len(frame_info): frame_info[-1] = (frame_info[-1] + " :").ljust(30) if len(frame_info) > 1: frame_info[0] = "┌" + frame_info[0] frame_info[-1] = "└" + frame_info[-1] for ii, info in enumerate(frame_info[1:-1], 1): frame_info[ii] = "├" + info record.frame_info = "\n".join(frame_info) return True _filter = _FrameFilter() logger.addFilter(_filter) # Provide help for static type checkers: # https://mypy.readthedocs.io/en/stable/generics.html#declaring-decorators _FuncT = TypeVar("_FuncT", bound=Callable[..., Any]) def verbose(function: _FuncT) -> _FuncT: """Verbose decorator to allow functions to override log-level. Parameters ---------- function : callable Function to be decorated by setting the verbosity level. Returns ------- dec : callable The decorated function. See Also -------- set_log_level set_config Notes ----- This decorator is used to set the verbose level during a function or method call, such as :func:`mne.compute_covariance`. The `verbose` keyword argument can be 'DEBUG', 'INFO', 'WARNING', 'ERROR', 'CRITICAL', True (an alias for 'INFO'), or False (an alias for 'WARNING'). To set the global verbosity level for all functions, use :func:`mne.set_log_level`. This function also serves as a docstring filler. Examples -------- You can use the ``verbose`` argument to set the verbose level on the fly:: >>> import mne >>> cov = mne.compute_raw_covariance(raw, verbose='WARNING') # doctest: +SKIP >>> cov = mne.compute_raw_covariance(raw, verbose='INFO') # doctest: +SKIP Using up to 49 segments Number of samples used : 5880 [done] """ # noqa: E501 # See https://decorator.readthedocs.io/en/latest/tests.documentation.html # #dealing-with-third-party-decorators try: fill_doc(function) except TypeError: # nothing to add pass # Anything using verbose should have `verbose=None` in the signature. # This code path will raise an error if this is not the case. body = """\ def %(name)s(%(signature)s):\n try: do_level_change = verbose is not None except (NameError, UnboundLocalError): raise RuntimeError('Function/method %%s does not accept verbose ' 'parameter' %% (_function_,)) from None if do_level_change: with _use_log_level_(verbose): return _function_(%(shortsignature)s) else: return _function_(%(shortsignature)s)""" evaldict = dict(_use_log_level_=use_log_level, _function_=function) fm = FunctionMaker(function) attrs = dict( __wrapped__=function, __qualname__=function.__qualname__, __globals__=function.__globals__, ) return fm.make(body, evaldict, addsource=True, **attrs) @fill_doc class use_log_level: """Context manager for logging level. Parameters ---------- %(verbose)s %(add_frames)s See Also -------- mne.verbose Notes ----- See the :ref:`logging documentation ` for details. Examples -------- >>> from mne import use_log_level >>> from mne.utils import logger >>> with use_log_level(False): ... # Most MNE logger messages are "info" level, False makes them not ... # print: ... logger.info('This message will not be printed') >>> with use_log_level(True): ... # Using verbose=True in functions, methods, or this context manager ... # will ensure they are printed ... logger.info('This message will be printed!') This message will be printed! """ def __init__(self, verbose=None, *, add_frames=None): self._level = verbose self._add_frames = add_frames self._old_frames = _filter.add_frames def __enter__(self): # noqa: D105 self._old_level = set_log_level( self._level, return_old_level=True, add_frames=self._add_frames ) def __exit__(self, *args): # noqa: D105 add_frames = self._old_frames if self._add_frames is not None else None set_log_level(self._old_level, add_frames=add_frames) _LOGGING_TYPES = dict( DEBUG=logging.DEBUG, INFO=logging.INFO, WARNING=logging.WARNING, ERROR=logging.ERROR, CRITICAL=logging.CRITICAL, ) @fill_doc def set_log_level(verbose=None, return_old_level=False, add_frames=None): """Set the logging level. Parameters ---------- verbose : bool, str, int, or None The verbosity of messages to print. If a str, it can be either DEBUG, INFO, WARNING, ERROR, or CRITICAL. Note that these are for convenience and are equivalent to passing in logging.DEBUG, etc. For bool, True is the same as 'INFO', False is the same as 'WARNING'. If None, the environment variable MNE_LOGGING_LEVEL is read, and if it doesn't exist, defaults to INFO. return_old_level : bool If True, return the old verbosity level. %(add_frames)s Returns ------- old_level : int The old level. Only returned if ``return_old_level`` is True. """ old_verbose = logger.level verbose = _parse_verbose(verbose) if verbose != old_verbose: logger.setLevel(verbose) if add_frames is not None: _filter.add_frames = int(add_frames) fmt = "%(frame_info)s " if add_frames else "" fmt += "%(message)s" fmt = logging.Formatter(fmt) for handler in logger.handlers: handler.setFormatter(fmt) return old_verbose if return_old_level else None def _parse_verbose(verbose): from .check import _check_option, _validate_type from .config import get_config _validate_type(verbose, (bool, str, int, None), "verbose") if verbose is None: verbose = get_config("MNE_LOGGING_LEVEL", "INFO") elif isinstance(verbose, bool): if verbose is True: verbose = "INFO" else: verbose = "WARNING" if isinstance(verbose, str): verbose = verbose.upper() _check_option("verbose", verbose, _LOGGING_TYPES, "(when a string)") verbose = _LOGGING_TYPES[verbose] return verbose def set_log_file(fname=None, output_format="%(message)s", overwrite=None): """Set the log to print to a file. Parameters ---------- fname : path-like | None Filename of the log to print to. If None, stdout is used. To suppress log outputs, use set_log_level('WARNING'). output_format : str Format of the output messages. See the following for examples: https://docs.python.org/dev/howto/logging.html e.g., "%(asctime)s - %(levelname)s - %(message)s". overwrite : bool | None Overwrite the log file (if it exists). Otherwise, statements will be appended to the log (default). None is the same as False, but additionally raises a warning to notify the user that log entries will be appended. """ _remove_close_handlers(logger) if fname is not None: if op.isfile(fname) and overwrite is None: # Don't use warn() here because we just want to # emit a warnings.warn here (not logger.warn) warnings.warn( "Log entries will be appended to the file. Use " "overwrite=False to avoid this message in the " "future.", RuntimeWarning, stacklevel=2, ) overwrite = False mode = "w" if overwrite else "a" lh = logging.FileHandler(fname, mode=mode) else: """we should just be able to do: lh = logging.StreamHandler(sys.stdout) but because doctests uses some magic on stdout, we have to do this: """ lh = logging.StreamHandler(WrapStdOut()) lh.setFormatter(logging.Formatter(output_format)) # actually add the stream handler logger.addHandler(lh) def _remove_close_handlers(logger): for h in list(logger.handlers): # only remove our handlers (get along nicely with nose) if isinstance(h, (logging.FileHandler, logging.StreamHandler)): if isinstance(h, logging.FileHandler): h.close() logger.removeHandler(h) class ClosingStringIO(StringIO): """StringIO that closes after getvalue().""" def getvalue(self, close=True): """Get the value.""" out = super().getvalue() if close: self.close() return out class catch_logging: """Store logging. This will remove all other logging handlers, and return the handler to stdout when complete. """ def __init__(self, verbose=None): self.verbose = verbose def __enter__(self): # noqa: D105 if self.verbose is not None: self._ctx = use_log_level(self.verbose) else: self._ctx = contextlib.nullcontext() self._data = ClosingStringIO() self._lh = logging.StreamHandler(self._data) self._lh.setFormatter(logging.Formatter("%(message)s")) self._lh._mne_file_like = True # monkey patch for warn() use _remove_close_handlers(logger) logger.addHandler(self._lh) self._ctx.__enter__() return self._data def __exit__(self, *args): # noqa: D105 self._ctx.__exit__(*args) logger.removeHandler(self._lh) set_log_file(None) @contextlib.contextmanager def _record_warnings(): # this is a helper that mostly acts like pytest.warns(None) did before # pytest 7 with warnings.catch_warnings(record=True) as w: warnings.simplefilter("always") yield w class WrapStdOut: """Dynamically wrap to sys.stdout. This makes packages that monkey-patch sys.stdout (e.g.doctest, sphinx-gallery) work properly. """ def __getattr__(self, name): # noqa: D105 # Even more ridiculous than this class, this must be sys.stdout (not # just stdout) in order for this to work (tested on OSX and Linux) if hasattr(sys.stdout, name): return getattr(sys.stdout, name) else: raise AttributeError(f"'file' object has not attribute '{name}'") _verbose_dec_re = re.compile("^$") def warn(message, category=RuntimeWarning, module="mne", ignore_namespaces=("mne",)): """Emit a warning with trace outside the mne namespace. This function takes arguments like warnings.warn, and sends messages using both ``warnings.warn`` and ``logger.warn``. Warnings can be generated deep within nested function calls. In order to provide a more helpful warning, this function traverses the stack until it reaches a frame outside the ``mne`` namespace that caused the error. Parameters ---------- message : str Warning message. category : instance of Warning The warning class. Defaults to ``RuntimeWarning``. module : str The name of the module emitting the warning. ignore_namespaces : list of str Namespaces to ignore when traversing the stack. .. versionadded:: 0.24 """ root_dirs = [importlib.import_module(ns) for ns in ignore_namespaces] root_dirs = [op.dirname(ns.__file__) for ns in root_dirs] frame = None if logger.level <= logging.WARNING: frame = inspect.currentframe() while frame: fname = frame.f_code.co_filename lineno = frame.f_lineno # in verbose dec if not _verbose_dec_re.search(fname): # treat tests as scripts # and don't capture unittest/case.py (assert_raises) if ( not ( any(fname.startswith(rd) for rd in root_dirs) or ("unittest" in fname and "case" in fname) ) or op.basename(op.dirname(fname)) == "tests" ): break frame = frame.f_back del frame # We need to use this instead of warn(message, category, stacklevel) # because we move out of the MNE stack, so warnings won't properly # recognize the module name (and our warnings.simplefilter will fail) warnings.warn_explicit( message, category, fname, lineno, module, globals().get("__warningregistry__", {}), ) # To avoid a duplicate warning print, we only emit the logger.warning if # one of the handlers is a FileHandler. See gh-5592 # But it's also nice to be able to do: # with mne.utils.use_log_level('warning', add_frames=3): # so also check our add_frames attribute. if ( any( isinstance(h, logging.FileHandler) or getattr(h, "_mne_file_like", False) for h in logger.handlers ) or _filter.add_frames ): logger.warning(message) def _get_call_line(): """Get the call line from within a function.""" frame = inspect.currentframe().f_back.f_back if _verbose_dec_re.search(frame.f_code.co_filename): frame = frame.f_back context = inspect.getframeinfo(frame).code_context context = "unknown" if context is None else context[0].strip() return context def filter_out_warnings(warn_record, category=None, match=None): r"""Remove particular records from ``warn_record``. This helper takes a list of :class:`warnings.WarningMessage` objects, and remove those matching category and/or text. Parameters ---------- category: WarningMessage type | None class of the message to filter out match : str | None text or regex that matches the error message to filter out """ regexp = re.compile(".*" if match is None else match) is_category = [ w.category == category if category is not None else True for w in warn_record._list ] is_match = [regexp.match(w.message.args[0]) is not None for w in warn_record._list] ind = [ind for ind, (c, m) in enumerate(zip(is_category, is_match)) if c and m] for i in reversed(ind): warn_record._list.pop(i) @contextlib.contextmanager def wrapped_stdout(indent="", cull_newlines=False): """Wrap stdout writes to logger.info, with an optional indent prefix. Parameters ---------- indent : str The indentation to add. cull_newlines : bool If True, cull any new/blank lines at the end. """ orig_stdout = sys.stdout my_out = ClosingStringIO() sys.stdout = my_out try: yield finally: sys.stdout = orig_stdout pending_newlines = 0 for line in my_out.getvalue().split("\n"): if not line.strip() and cull_newlines: pending_newlines += 1 continue for _ in range(pending_newlines): logger.info("\n") logger.info(indent + line) def _frame_info(n): frame = inspect.currentframe() try: frame = frame.f_back infos = list() for _ in range(n): try: name = frame.f_globals["__name__"] except KeyError: # in our verbose dec pass else: infos.append(f'{name.lstrip("mne.")}:{frame.f_lineno}') frame = frame.f_back if frame is None: break return infos except Exception: return ["unknown"] finally: del frame def _verbose_safe_false(*, level="warning"): lev = _LOGGING_TYPES[level.upper()] return lev if logger.level <= lev else None